5 Natural Ways to Heal Your Gut from Crohn’s & Ulcerative Colitis

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Healing your gut after a Crohn’s or ulcerative colitis flare can feel overwhelming, but natural approaches focus on addressing root causes, managing symptoms, and restoring overall gut health. Below are five actionable takeaways that emphasize dietary, lifestyle, and holistic methods to promote healing.

  • Prioritize a gut-nourishing anti-inflammatory diet: Incorporate whole, easily digestible foods like bone broth, cooked vegetables, and omega-3-rich sources (e.g., salmon), while reducing inflammatory triggers such as processed foods and refined sugars.
  • Probiotics rebuild gut microbiome balance: Focus on high-quality probiotics or fermented foods like sauerkraut to introduce beneficial bacteria, crucial for repairing the gut lining and reducing inflammation.
  • Stress management is a cornerstone of gut health: Chronic stress exacerbates gut inflammation. Support healing through mindfulness practices, yoga, or deep breathing exercises to calm the nervous system.
  • Sleep fuels gut recovery naturally: Prioritize restorative sleep, which aids in cell repair and reduces overall inflammation. Create a calming bedtime routine to improve sleep quality.
  • Gentle exercise supports holistic healing: Activities like walking, swimming, or low-impact yoga improve circulation and reduce stress, while being easy on the digestive system.

When healing from conditions like Crohn’s and ulcerative colitis, adopting a holistic lifestyle and addressing both physical and mental well-being can dramatically enhance recovery. Ahead, we’ll dive into these strategies in more detail, helping you tailor an approach that works best for your body.

The Healing Journey Begins: Understanding IBD Recovery

Struggling with a Crohn’s or ulcerative colitis flare can drain your energy, disrupt your life, and make even simple tasks feel insurmountable. I’ve seen countless patients walk into my office feeling defeated by these conditions, wondering if they’ll ever feel well again. But here’s the truth I share with them: your gut has a remarkable capacity to heal when given the right support.

In conventional medicine, we often focus primarily on managing symptoms and preventing disease progression with medications. While these approaches have their place, they sometimes miss the deeper work of addressing root causes and supporting your body’s innate healing mechanisms.

In this article, we’ll explore five natural approaches to heal your gut from Crohn’s and ulcerative colitis—approaches that complement conventional care while addressing underlying imbalances. These strategies work with your body rather than just against the disease, creating a foundation for lasting improvement rather than temporary symptom relief.

Let’s dive into these healing pathways, keeping in mind that true healing is personal—what works beautifully for one person may need modification for another. Your body has its own wisdom, and learning to work with it is key to your healing journey.

1. The Anti-inflammatory Diet: Food as Medicine for IBD

The food you eat has a profound impact on your gut’s healing environment—it can either fuel inflammation or help extinguish it. For those with Crohn’s and ulcerative colitis, certain foods can trigger flare-ups, while others provide the building blocks needed for repair and recovery.

I’ve found that most patients benefit from an anti-inflammatory approach that emphasizes whole, unprocessed foods while eliminating common triggers. This isn’t about following a one-size-fits-all diet but rather discovering what works best for your unique body.

Here’s what I typically recommend during active flares:

  • Begin with easily digestible foods: Bone broth, pureed soups, cooked vegetables, and gentle proteins provide nutrients without taxing the digestive system.
  • Focus on omega-3 rich foods: Wild-caught salmon, sardines, and carefully prepared flaxseed can help counter inflammation naturally. Several of my patients have noticed significant improvements in their symptoms when regularly incorporating these foods.
  • Experiment with elimination: Common triggers include gluten, refined sugars, conventional dairy, processed foods, seed oils, and artificial ingredients. Removing these for at least 30 days often reveals which ones are problematic for you specifically.
  • Consider the Mediterranean pattern: This eating style emphasizes olive oil, vegetables, fish, and nuts—all foods that help reduce inflammation. Research has shown benefits for those with IBD when following this pattern.

The transition to an anti-inflammatory diet takes time and patience. I recommend starting with small changes rather than a complete overhaul, which can feel overwhelming. Keep a simple food journal to track not just what you eat but how you feel afterward—this becomes invaluable for identifying your unique patterns and triggers.

What’s fascinating is how the benefits often extend beyond digestive symptoms. Many patients report improvements in energy, sleep quality, and even mood when they shift to an anti-inflammatory eating pattern. This makes sense when we consider that gut health influences nearly every system in the body.

Remember that healing diets aren’t forever diets—as your gut heals, your food tolerance may expand. The goal isn’t restriction but rather creating an internal environment where healing can flourish.

2. Natural Remedies: Supporting the Body’s Healing Response

Beyond dietary changes, specific herbs, supplements, and natural compounds can help soothe inflammation and support the gut’s repair process. While these shouldn’t replace prescribed medications without medical supervision, they can complement conventional treatment and often address aspects of healing that medications don’t target.

Here are some of the most promising natural remedies I’ve seen benefit IBD patients:

  • Curcumin: This active compound in turmeric has powerful anti-inflammatory properties. Research shows it can help maintain remission in ulcerative colitis when used as a complementary approach. The key is finding a bioavailable form—I recommend looking for formulations with piperine (black pepper extract) or liposomal delivery for better absorption.
  • Aloe vera: Known for its soothing properties, high-quality inner leaf aloe juice can help calm irritated intestinal tissue. Start with small amounts (1-2 tablespoons) and gradually increase as tolerated.
  • Boswellia: This resin from the frankincense tree has shown promise in reducing inflammation specific to IBD. Its effectiveness builds over time, so consistency is important.
  • L-glutamine: This amino acid serves as fuel for intestinal cells and may help repair the gut lining. During active inflammation, the gut’s requirement for glutamine increases significantly.
  • Zinc: Essential for tissue repair and immune function, zinc status is often compromised in chronic IBD. Food sources include pumpkin seeds, beef, and oysters, though supplementation may be necessary during active disease.

I’ve noticed that timing matters with these remedies. Taking anti-inflammatory substances like curcumin between meals often works better for systemic effects, while gut-healing compounds like L-glutamine might be more effective when taken with small amounts of food.

It’s worth noting that natural doesn’t always mean safe for everyone. Quality matters tremendously, and some natural substances can interact with medications or be inappropriate for certain individuals. This is why I always recommend working with a knowledgeable practitioner who understands both natural approaches and conventional IBD treatment.

The goal with these remedies isn’t to suppress symptoms but to address the underlying inflammatory processes and support your body’s healing mechanisms. When used thoughtfully, they can help create a foundation for lasting improvement rather than temporary relief.

3. Lifestyle Modifications: Creating a Foundation for Gut Healing

While diet and natural remedies directly address gut inflammation, your daily habits and routines create the broader context for healing. Lifestyle factors often make the difference between occasional improvements and sustained recovery.

Sleep, in particular, deserves special attention. During deep sleep, your body performs essential repair processes, including healing damaged gut tissue. I’ve observed that many IBD patients who struggle with frequent flares also have disrupted sleep patterns, creating a challenging cycle where gut symptoms interrupt sleep, and poor sleep worsens gut inflammation.

Breaking this cycle requires intentional sleep hygiene:

  • Establish a consistent sleep schedule, even on weekends
  • Create a calming bedtime routine that signals to your body it’s time to wind down
  • Consider supplementing with gentle sleep supporters like magnesium glycinate or small amounts of melatonin if needed
  • Keep your bedroom cool, dark, and free from electronic devices

Beyond sleep, regular, gentle movement supports gut healing in multiple ways. It reduces stress hormone levels, improves circulation to digestive organs, and helps maintain healthy gut motility. During flares, gentler options like walking, swimming, or restorative yoga are often best tolerated.

I remember working with a patient who had been largely sedentary due to fatigue from ulcerative colitis. We started with just five minutes of gentle walking after meals. Over time, this simple practice improved her digestion, reduced post-meal discomfort, and gradually increased her energy levels, allowing her to expand her activity.

Another lifestyle factor that profoundly influences gut health is how you eat. Many people with IBD develop anxiety around eating due to fear of triggering symptoms. This creates a stress response that actually makes digestion more difficult. Practicing mindful eating—taking time to sit, breathe, and focus on your meal without distractions—can help shift your nervous system into the parasympathetic “rest and digest” mode, where healing and digestion are optimized.

These lifestyle modifications may seem simple, but their cumulative effect can be powerful. They create a foundation that supports all your other healing efforts, making dietary changes and natural remedies more effective by ensuring your body has the baseline resources it needs to heal.

4. Probiotics and Microbiome Support: Rebuilding Your Gut Ecosystem

The gut microbiome—that complex community of trillions of bacteria living in your digestive tract—plays a central role in IBD. Research consistently shows that people with Crohn’s and ulcerative colitis have altered microbiome compositions, often with decreased diversity and beneficial species.

Restoring balance to this inner ecosystem can help reduce inflammation and promote healing. However, the approach needs to be thoughtful—not all probiotics are beneficial for all IBD patients, and timing matters tremendously.

During active flares, some people feel better with a “less is more” approach, focusing on gentle, well-researched strains like Saccharomyces boulardii (technically a beneficial yeast) or specific Bifidobacterium or lactobacillus strains. As inflammation calms, a broader variety of beneficial bacteria can be introduced.

Beyond supplements, consider these approaches for nurturing your microbiome:

  • Fermented foods: Small amounts of properly prepared sauerkraut, kimchi, or coconut kefir can introduce beneficial organisms in a food-based matrix. Start with tiny portions (even just a teaspoon) and gradually increase as tolerated.
  • Prebiotic foods: Once out of an acute flare, gradually introducing small amounts of prebiotic foods—those that feed beneficial bacteria—can help restore diversity. Well-cooked onions, leeks, asparagus, and green bananas contain prebiotic fibers that can be gentler than raw forms.
  • Environmental exposure: Time in nature, gardening, and even having pets can all help diversify your microbiome in beneficial ways.

I’ve found that patience and consistency are crucial when working with the microbiome. Quick fixes are rare, but steady, gentle support often yields lasting improvements. Your gut ecosystem took time to become imbalanced, and it needs time to reestablish healthier patterns.

Remember that microbiome health isn’t just about adding “good bugs”—it’s equally important to create an internal environment where they can thrive. This connects back to our earlier discussions about diet, lifestyle, and stress management, highlighting how all these approaches work together synergistically.

5. Stress Management: Healing the Gut-Brain Connection

Perhaps no factor has a more immediate and profound impact on gut function than stress. The gut and brain are in constant communication through multiple pathways, including the vagus nerve, immune signaling, and hormone regulation. When you’re stressed, this communication goes into overdrive, often triggering or worsening IBD symptoms.

This isn’t just theoretical—I’ve seen patients have flare-ups triggered by emotional events, work pressure, or even positive but stressful life changes like moving or getting married. Learning to regulate your stress response isn’t a luxury for IBD patients—it’s an essential component of healing.

Effective stress management for IBD goes beyond generic advice to “relax more.” It involves specific practices that activate your parasympathetic nervous system, which governs relaxation and healing:

  • Diaphragmatic breathing: Simple but powerful, deep belly breathing for just 5-10 minutes daily can reduce stress hormones and increase vagal tone, which helps calm gut inflammation. I often recommend the 4-7-8 pattern: inhale for 4 counts, hold for 7, exhale for 8.
  • Mindfulness meditation: Research specifically on IBD patients shows that mindfulness practices can reduce flare frequency and severity. Even brief sessions of 10-15 minutes can make a difference when practiced consistently.
  • Vagus nerve stimulation: Gentle practices like humming, singing, gargling, or cold water face immersion can stimulate the vagus nerve, strengthening the body’s natural relaxation response.
  • Emotional and stress support: Working with a practitioner who understands chronic illness can be invaluable, especially for processing the emotional aspects of living with IBD. Cognitive-behavioral therapy, acceptance and commitment therapy, and somatic experiencing are all approaches that have helped my patients.

What’s fascinating is how addressing the mind-gut connection often creates ripple effects throughout the healing journey. As stress levels decrease, many patients find they tolerate more foods, absorb nutrients better, and respond more favorably to other treatments.

One approach I often recommend is creating a “stress management toolkit” with several different practices you can turn to depending on the situation. For acute stress, breathing techniques might work best; for ongoing stress, a regular meditation practice might be more effective; and for processing difficult emotions, journaling or therapy might be most helpful.

Remember that stress management isn’t about eliminating stress entirely (which is impossible) but rather about changing your relationship with stress and strengthening your ability to return to balance quickly when stress occurs. This resilience becomes a powerful ally in your healing journey.

The Path Forward: Integrating Natural Approaches with Conventional Care

As we wrap up our exploration of these five natural approaches to healing your gut from Crohn’s and ulcerative colitis, it’s important to emphasize that these strategies work best as part of an integrated approach. There are times when medications and medical procedures are necessary, at least in the short term while the root cause issues are addressed.  An integrative Gastroenterologist will be able to create a more comprehensive healing plan that addresses both immediate symptoms and underlying imbalances.  

The most successful healing journeys I’ve witnessed have been those where patients worked collaboratively with healthcare providers from both conventional and integrative backgrounds. This approach gives you the benefit of powerful medications when needed, while also supporting your body’s innate healing capacity through diet, lifestyle, and natural remedies.

Remember that healing is rarely linear—especially with complex conditions like IBD. There will likely be setbacks along with progress, and what works during one phase of your journey may need adjustment during another. This isn’t failure; it’s part of the process of discovering what your unique body needs.

I encourage you to approach these natural healing strategies with both hope and patience. Hope, because significant improvement is possible—I’ve seen it countless times in my practice. Patience, because deep healing takes time, especially when you’re addressing the root causes rather than just managing symptoms.

Start small, perhaps with just one or two changes from this article. Notice how your body responds, adjust as needed, and gradually build a personalized approach that supports your healing. And throughout this process, remember that you’re not just managing a disease—you’re rebuilding your health and vitality from the ground up, creating effects that can benefit every aspect of your well-being.

This article is for informational purposes only and does not constitute medical advice. Please consult with qualified healthcare providers before making changes to your treatment plan, especially regarding medication management. These natural approaches are meant to complement, not replace, conventional medical care for inflammatory bowel disease.

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