
SIFO manifestations vary based on underlying causes, fungal species involved, and individual immune status, each requiring specific assessment and targeted treatment approaches.
| Type | Primary Characteristics | Common Contributing Factors | Considerations |
|---|---|---|---|
| Immunocompromised SIFO | Severe overgrowth in patients with weakened immune systems | HIV/AIDS, immunosuppressive medications, cancer treatment | Requires aggressive antifungal treatment with immune system support |
| Antibiotic-Induced SIFO | Fungal overgrowth following broad-spectrum antibiotic use | Disrupted bacterial competition, loss of beneficial bacteria | Focus on microbiome restoration and competitive inhibition |
| PPI-Associated SIFO | Overgrowth related to reduced stomach acid production | Proton pump inhibitor use, hypochlorhydria | Address acid production and medication review when possible |
| Metabolic SIFO | Overgrowth in patients with diabetes or metabolic dysfunction | High sugar intake, insulin resistance, poor glycemic control | Requires metabolic optimization and dietary modification |

Gastrointestinal Symptoms:
Neurological and Cognitive Symptoms:
Systemic and Immune Symptoms:
Signs of Intestinal Permeability:
Comprehensive SIFO evaluation requires specialized testing to identify fungal overgrowth and assess underlying contributing factors. At Whole Gut Health, we use advanced diagnostics to create personalized treatment protocols that address root causes.
Testing options may include:
Applied Kinesiology (muscle testing) to help with precisely delineate diagnosis, root causes, and treatment options
Comprehensive Stool Analysis to identify candida species
Candida Antibody Testing (IgA, IgG, IgM) to assess immune response to Candida overgrowth and chronic exposure.
SIBO Breath Testing since SIFO frequently coexists with bacterial overgrowth and requires concurrent treatment.
Comprehensive Digestive Analysis including assessment of digestion including markers of malabsorption and maldigestion
Immune Function Assessment to evaluate factors contributing to fungal susceptibility including complete blood count and inflammatory markers.
Organic Acids Testing to identify fungal metabolites and assess overall metabolic function affected by overgrowth.
We customize testing protocols based on your symptom pattern, medical history, and suspected contributing factors to ensure comprehensive evaluation and optimal treatment planning.

Our Three-Phase SIFO Resolution Protocol Includes:
1. Assessment and Root-Cause Identification
2. Targeted Intervention
3. Rebuilding and Prevention

Dr. Alexandra Shustina, NYC’s and Miami’s premier gut health specialist doctor is a board-certified gastroenterologist and internist. She is a gut health specialist with training in conventional gastroenterology and functional gut health. She is an expert in the gut microbiome and its role in health and wellness.
At Whole Gut Health, our care is led by experienced functional medicine clinicians with a deep understanding of the gut microbiome and advanced diagnostics. We combine evidence-based strategies from conventional gastroenterology with a functional and integrative lens to give you the clarity and support needed for long-term healing.
SIFO (Small Intestinal Fungal Overgrowth) occurs when excessive fungal organisms, predominantly Candida species, proliferate in the small intestine where they normally exist in minimal quantities. This overgrowth can form protective biofilms, damage the intestinal lining, and interfere with digestion, nutrient absorption, and immune function, leading to a wide range of systemic symptoms.
Immunocompromised SIFO
Antibiotic-Induced SIFO
PPI-Associated SIFO
Metabolic SIFO
Gastrointestinal: Chronic bloating, gas, diarrhea, nausea, acid reflux, abdominal pain
Neurological: Brain fog, chronic fatigue, headaches, anxiety, sleep disturbances
Systemic: Recurrent fungal infections, skin issues, food sensitivities, frequent infections, sugar cravings
Intestinal Permeability Signs: Multiple food sensitivities, environmental sensitivities, joint pain, autoimmune symptoms, nutrient deficiencies
Comprehensive evaluation includes multiple assessment approaches:
Applied Kinesiology (muscle testing) to help with precisely delineate diagnosis, root causes and treatment options
Comprehensive Stool Analysis
Candida Antibody Testing
SIBO Breath Testing
Comprehensive Digestive Analysis
Organic Acids Testing
Testing protocols are customized based on symptoms and suspected contributing factors.
Our comprehensive three-phase SIFO resolution protocol includes:
Phase 1: Assessment and Root-Cause Identification
Phase 2: Targeted Intervention
Phase 3: Long-Term Prevention and Microbiome Balance
Candida and other fungi form biofilms as protective matrices that make them resistant to both antifungal treatments and immune responses. These biofilms allow fungi to persist despite treatment and contribute to chronic infections. Effective SIFO treatment may require strategies using natural compounds and food as medicine sources to disrupt the biofilm.
Yes, SIFO can be successfully resolved with comprehensive treatment addressing root causes. However, lasting resolution requires more than just antifungal treatment—it necessitates gut microbiome restoration, immune system optimization, and addressing underlying factors that allowed fungal overgrowth initially. Our approach focuses on creating an environment in which SIFO cannot form.
At Whole Gut Health, we take a comprehensive approach to SIFO that goes beyond antifungal treatment:
Dr. Alexandra Shustina is a board-certified gastroenterologist and internist who serves as NYC's and Miami's premier gut health specialist. She has training in both conventional gastroenterology and functional gut health, with expertise in the gut microbiome and its role in health and wellness.
The first step is scheduling a comprehensive consultation where we'll:
Contact our office to schedule your initial consultation and begin your journey toward complete SIFO resolution and optimal gut microbiome balance.
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